Speaker
Description
One of the key opportunities offered by the development of x-ray free-electron lasers is the determination, at atomic resolution, of the three-dimensional structure of biologically relevant macromolecules. The basic idea underlying molecular imaging using x-ray free-electron lasers is the ``diffract-and-destroy'' concept: If one uses an x-ray pulse that is sufficiently short (on the order of femtoseconds), then in a single shot an x-ray scattering pattern may be obtained that is practically unaffected by atomic displacements triggered by ionization events during the x-ray pulse. What cannot be eliminated in this way is the impact of the electronic damage on the x-ray scattering patterns. Theory, therefore, plays an important role in the development of this new imaging technique: A quantitative understanding is required of the damage processes occurring during the exposure of a molecule to an ultraintense, ultrafast x-ray pulse. In this talk, I will present progress we have made in order to address this challenge. One tool we have developed, XMDYN [1], is a molecular-dynamics code that utilizes ab-initio atomic electronic-structure information, computed on the fly, within a Monte-Carlo framework. XMDYN has been successfully tested through experiments at LCLS [2] and SACLA [3]. XMDYN is part of a powerful start-to-end simulation framework for single-particle imaging at the European XFEL [4,5]. Recently, we have taken first steps towards a full ab-initio framework for simulating high-intensity x-ray/matter interactions [6,7]. Our new XMOLECULE software solves the polyatomic quantum-mechanical electronic-structure problem for every electronic state arising during the exposure of a molecule to a strong x-ray pulse. From this information, electronic transition rates (such as Auger decay rates) are computed on the fly, and the associated rate equations are integrated utilizing a Monte-Carlo method. XMOLECULE played a key role in a recent LCLS experiment on iodomethane, in which hard x-rays focused to a peak intensity exceeding $10^{19}$ W/cm$^2$ produced the highest charge states ever formed using light [8]. Not only did XMOLECULE correctly predict the charge-state distribution observed, but it also helped identify a new molecular ionization enhancement mechanism based on intramolecular charge transfer.
[1] Z. Jurek et al., J. Appl. Cryst. 49, 1048 (2016).
[2] B. F. Murphy et al., Nature Commun. 5, 4281 (2014).
[3] T. Tachibana et al., Sci. Rep. 5, 10977 (2015).
[4] C. H. Yoon et al., Sci. Rep. 6, 24791 (2016).
[5] C. Fortmann-Grote et al., IUCrJ 4, 560 (2017).
[6] Y. Hao et al., Struct. Dyn. 2, 041707 (2015).
[7] L. Inhester et al., Phys. Rev. A 94, 023422 (2016).
[8] A. Rudenko et al., Nature 546, 129 (2017).
